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1

Molecular phylogenetics: principles and practice

Yang, Ziheng, Rannala, Bruce

Journal:

Nature Reviews Genetics

Year:

2012

Language:

english

File:

PDF, 574 KB

english, 2012

2

The Bayesian revolution in genetics

Beaumont, Mark A., Rannala, Bruce

Journal:

Nature Reviews Genetics

Year:

2004

Language:

english

File:

PDF, 211 KB

english, 2004

3

Methods for multipoint disease mapping using linkage disequilibrium

Bruce Rannala, Montgomery Slatkin

Journal:

Genetic Epidemiology

Year:

2000

Language:

english

File:

PDF, 1.38 MB

english, 2000

4

Identification and analysis of evolutionary selection pressures acting at the molecular level in five forkhead subfamilies

Christina D Fetterman, Bruce Rannala, Michael A Walter

Journal:

BMC Evolutionary Biology

Year:

2008

Language:

english

File:

PDF, 852 KB

english, 2008

5

Phylogenetic Inference Using Whole Genomes

Rannala, Bruce, Yang, Ziheng

Journal:

Annual Review of Genomics and Human Genetics

Year:

2008

Language:

english

File:

PDF, 297 KB

english, 2008

6

Coalescent Theory: An Introduction

Rannala, Bruce H.

Journal:

Quarterly Review of Biology

Year:

2009

Language:

english

File:

PDF, 94 KB

english, 2009

7

Maximum Likelihood Estimation of Phylogeny Using Stratigraphic Data

John P. Huelsenbeck and Bruce Rannala

Journal:

Year:

1997

Language:

english

File:

PDF, 821 KB

english, 1997

8

Finding Genes Influencing Susceptibility to Complex Diseases in the Post-Genome Era

Dr Bruce Rannala

Journal:

American Journal of PharmacoGenomics

Year:

2001

Language:

english

File:

PDF, 228 KB

english, 2001

9

Conceptual issues in Bayesian divergence time estimation

Journal:

Philosophical Transactions Biological Sciences

Year:

2016

Language:

english

File:

PDF, 321 KB

english, 2016

10

Using linked markers to infer the age of a mutation

Bruce Rannala, Giorgio Bertorelle

Journal:

Year:

2001

Language:

english

File:

PDF, 328 KB

english, 2001

11

Colony choice in birds: models based on temporally invariant site quality

Charles R. Brown, Bruce Rannala

Journal:

Behavioral Ecology and Sociobiology

Year:

1995

Language:

english

File:

PDF, 870 KB

english, 1995

12

Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference

Bruce Rannala, Ziheng Yang

Journal:

Journal of Molecular Evolution

Year:

1996

Language:

english

File:

PDF, 729 KB

english, 1996

13

A BAYESIAN FRAMEWORK FOR THE ANALYSIS OF COSPECIATION

John P. Huelsenbeck, Bruce Rannala, Bret Larget

Journal:

Year:

2000

Language:

english

File:

PDF, 278 KB

english, 2000

14

DETECTING CORRELATION BETWEEN CHARACTERS IN A COMPARATIVE ANALYSIS WITH UNCERTAIN PHYLOGENY

John P. Huelsenbeck, Bruce Rannala

Journal:

Year:

2003

Language:

english

File:

PDF, 275 KB

english, 2003

15

Bayesian estimation of molecular evolutionary trees.

ZILHENG YANG, BRUCE RANNALA

Journal:

Annals of Human Genetics

Year:

1998

Language:

english

File:

PDF, 191 KB

english, 1998

16

Evidence from the stop-EGFP mouse supports a niche-sharing model of epidermal proliferative units

Simon Ro, Bruce Rannala

Journal:

Experimental Dermatology

Year:

2005

Language:

english

File:

PDF, 4.46 MB

english, 2005

17

Gene genealogy in a population of variable size

Journal:

Year:

1997

Language:

english

File:

PDF, 146 KB

english, 1997

18

A stop-EGFP transgenic mouse to detect clonal cell lineages generated by mutation

Ro, Simon, Rannala, Bruce

Journal:

Year:

2004

Language:

english

File:

PDF, 264 KB

english, 2004

19

TP53 gene mutations of lung cancer patients in upper northern Thailand and environmental risk factors

Kanokkan Bumroongkit, Bruce Rannala, Patrinee Traisathit, Metawee Srikummool, Yannawan Wongchai, Daoroong Kangwanpong

Journal:

Cancer Genetics and Cytogenetics

Year:

2008

Language:

english

File:

PDF, 264 KB

english, 2008

20

ESTIMATING ALLELE AGE

Slatkin, Montgomery, Rannala, Bruce

Journal:

Annual Review of Genomics and Human Genetics

Year:

2000

Language:

english

File:

PDF, 157 KB

english, 2000

21

The Sampling Theory of Neutral Alleles in an Island Population of Fluctuating Size

Journal:

Theoretical Population Biology

Year:

1996

Language:

english

File:

PDF, 344 KB

english, 1996

22

On the Genealogy of a Rare Allele

Journal:

Theoretical Population Biology

Year:

1997

Language:

english

File:

PDF, 441 KB

english, 1997

23

Likelihood Analysis of Disequilibrium Mapping, and Related Problems

Bruce Rannala, Montgomery Slatkin

Journal:

The American Journal of Human Genetics

Year:

1998

Language:

english

File:

PDF, 902 KB

english, 1998

24

High-Resolution Multipoint Linkage-Disequilibrium Mapping in the Context of a Human Genome Sequence

Bruce Rannala, Jeff P. Reeve

Journal:

The American Journal of Human Genetics

Year:

2001

Language:

english

File:

PDF, 1.42 MB

english, 2001

25

In Silico Analysis of Disease-Association Mapping Strategies Using the Coalescent Process and Incorporating Ascertainment and Selection

Ying Wang, Bruce Rannala

Journal:

The American Journal of Human Genetics

Year:

2005

Language:

english

File:

PDF, 626 KB

english, 2005

26

Relatedness and conflict over optimal group size

Bruce H. Rannala, Charles R. Brown

Journal:

Trends in Ecology & Evolution

Year:

1994

Language:

english

File:

PDF, 583 KB

english, 1994

27

Meiotic gene-conversion rate and tract length variation in the human genome

Padhukasahasram, Badri, Rannala, Bruce

Journal:

European Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 1.03 MB

english, 2013

28

Detecting Immigration by Using Multilocus Genotypes

Bruce Rannala and Joanna L. Mountain

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.32 MB

english, 1997

29

Using Rare Mutations to Estimate Population Divergence Times: A Maximum Likelihood Approach

Giorgio Bertorelle and Bruce Rannala

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.01 MB

english, 1998

30

Ectoparasites Reduce Long-Term Survival of their Avian Host

Charles R. Brown, Mary Bomberger Brown and Bruce Rannala

Journal:

Proceedings Biological Sciences

Year:

1995

Language:

english

File:

PDF, 1005 KB

english, 1995

31

Bioinformatics: A Practical Guide to the Analysis of Genes and Proteinsby Andreas D. Baxevanis; B. F. Francis Ouellette

Review by: Bruce Rannala

Journal:

Quarterly Review of Biology

Year:

1999

Language:

english

File:

PDF, 118 KB

english, 1999

32

Bioinformatics for Geneticists: A Bioinformatics Primer for the Analysis of Genetic Data.By Michael R. Barnes

Review by: Reviewed by Bruce Rannala

Journal:

Quarterly Review of Biology

Year:

2008

Language:

english

File:

PDF, 274 KB

english, 2008

33

Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins.Third Edition. Edited by Andreas D Baxevanis and B F Francis Ouellette

Journal:

Quarterly Review of Biology

Year:

2005

Language:

english

File:

PDF, 91 KB

english, 2005

34

Colony Choice in Birds: Models Based on Temporally Invariant Site Quality

Charles R. Brown and Bruce Rannala

Journal:

Behavioral Ecology and Sociobiology

Year:

1995

Language:

english

File:

PDF, 1.70 MB

english, 1995

35

Statistical Tests of Host-Parasite Cospeciation

John P. Huelsenbeck, Bruce Rannala and Ziheng Yang

Journal:

Year:

1997

Language:

english

File:

PDF, 1.74 MB

english, 1997

36

Detecting Correlation between Characters in a Comparative Analysis with Uncertain Phylogeny

John P. Huelsenbeck and Bruce Rannala

Journal:

Year:

2003

Language:

english

File:

PDF, 1.97 MB

english, 2003

37

Insight into Speciation from Historical Demography in the Phytophagous Beetle Genus Ophraella

L. Lacey Knowles, Douglas J. Futuyma, Walter F. Eanes and Bruce Rannala

Journal:

Year:

1999

Language:

english

File:

PDF, 1.47 MB

english, 1999

38

A Bayesian Framework for the Analysis of Cospeciation

John P. Huelsenbeck, Bruce Rannala and Bret Larget

Journal:

Year:

2000

Language:

english

File:

PDF, 1.43 MB

english, 2000

39

Inferring Speciation Times under an Episodic Molecular Clock

Rannala, Bruce, Yang, Ziheng

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 1.69 MB

english, 2007

40

Identifiability of Parameters in MCMC Bayesian Inference of Phylogeny

Journal:

Systematic Biology

Year:

2002

Language:

english

File:

PDF, 114 KB

english, 2002

41

Branch-Length Prior Influences Bayesian Posterior Probability of Phylogeny

Yang, Ziheng, Rannala, Bruce

Journal:

Systematic Biology

Year:

2005

Language:

english

File:

PDF, 481 KB

english, 2005

42

Inferring Complex DNA Substitution Processes on Phylogenies Using Uniformization and Data Augmentation

Mateiu, Ligia, Rannala, Bruce

Journal:

Systematic Biology

Year:

2006

Language:

english

File:

PDF, 1.60 MB

english, 2006

43

DETECTING CORRELATION BETWEEN CHARACTERS IN A COMPARATIVE ANALYSIS WITH UNCERTAIN PHYLOGENY

Huelsenbeck, John P., Rannala, Bruce

Journal:

Year:

2003

Language:

english

File:

PDF, 284 KB

english, 2003

44

Frequentist Properties of Bayesian Posterior Probabilities of Phylogenetic Trees Under Simple and Complex Substitution Models

Huelsenbeck, John, Rannala, Bruce

Journal:

Systematic Biology

Year:

2004

Language:

english

File:

PDF, 457 KB

english, 2004

45

Summarizing a Posterior Distribution of Trees Using Agreement Subtrees

Cranston, Karen A., Rannala, Bruce

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 577 KB

english, 2007

46

Taxon Sampling and the Accuracy of Large Phylogenies

Journal:

Systematic Biology

Year:

1998

Language:

english

File:

PDF, 154 KB

english, 1998

47

A BAYESIAN FRAMEWORK FOR THE ANALYSIS OF COSPECIATION

Huelsenbeck, John P., Rannala, Bruce, Larget, Bret

Journal:

Year:

2000

Language:

english

File:

PDF, 287 KB

english, 2000

48

Polymorphic Characters and Phylogenetic Analysis: A Statistical Perspective

Journal:

Systematic Biology

Year:

1995

Language:

english

File:

PDF, 1.02 MB

english, 1995

49

Evidence for Host Allozymes Present on Electrophoretic Gels of Trematode Parasites (Digenea: Plagiorchiiformes)

Bruce H. Rannala

Journal:

Journal of Parasitology

Year:

1991

Language:

english

File:

PDF, 364 KB

english, 1991

50

Bayesian species delimitation using multilocus sequence data

Ziheng Yang, Bruce Rannala and Scott V. Edwards

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.19 MB

english, 2010

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